2019

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics
H. Budamgunta, E. Maes, H. Willems, G. Menschaert, K. Schildermans, A. Kumar, K. Boonen and G. Baggerman
(2019) JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 1124,

MGMT promoter methylation cutoff with safety margin for selecting glioblastoma patients into trials omitting temozolomide : a pooled analysis of four clinical trials
M. Hegi, E. Genbrugge, T. Gorlia, R. Stupp, M. Gilbert, O. Chinot, L. Nabors, G. Jones, W. Van Criekinge, J. Straub and M. Weller
(2019) CLINICAL CANCER RESEARCH, 25,

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert and P. Van Damme
(2019) MOLECULAR & CELLULAR PROTEOMICS, 18,

Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine
K. Boonen, K. Hens, G. Menschaert, G. Baggerman, D. Valkenborg and G. Ertaylan
(2019) GENES, 10, 682

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis
E. Hayakawa, H. Watanabe, G. Menschaert, T. Holstein, G. Baggerman and L. Schoofs
(2019) PLOS ONE, 14, e0215185

Cost-effectiveness of SelectMDx for prostate cancer in four European countries : a comparative modeling study
T. Govers, D. Hessels, V. Vlaeminck-Guillem, B. Schmitz-Draeger, C. Stief, C. Martinez-Ballesteros, M. Ferro, A. Borque-Fernando, J. Rubio-Briones, J. Sedelaarll, W. Van Criekinge and J. Schalken
(2019) PROSTATE CANCER AND PROSTATIC DISEASES, 22,

2018

mQC : a post-mapping data exploration tool for ribosome profiling
S. Verbruggen and G. Menschaert
(2018) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 181, 104806

A gene family coding for salivary proteins (SHOT) of the polyphagous spider mite Tetranychus urticae exhibits fast host-dependent transcriptional plasticity
W. Jonckheere, W. Dermauw, M. Khaglighi, N. Pavlidi, W. Reubens, G. Baggerman, L. Tirry, G. Menschaert, M. Kant, B. Vanholme and T. Van Leeuwen
(2018) MOLECULAR PLANT-MICROBE INTERACTIONS, 31,

Evaluation of bisulfite kits for DNA methylation profiling in terms of DNA fragmentation and DNA recovery using digital PCR
S. Kint, W. De Spiegelaere, J. De Kesel, L. Vandekerckhove and W. Van Criekinge
(2018) PLOS ONE, 13, e0199091

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling
V. Olexiouk, W. Van Criekinge and G. Menschaert
(2018) NUCLEIC ACIDS RESEARCH, 46,