2021

Non-coding RNAs in the interaction between rice and Meloidogyne graminicola
B. Verstraeten, M. Atighi Quchan Atigh, V. Ruiz-Ferrer, C. Escobar, T. De Meyer and T. Kyndt
(2021) BMC GENOMICS, 22, 560

Genome-wide shifts in histone modifications at early stage of rice infection with Meloidogyne graminicola
M. Atighi Quchan Atigh, B. Verstraeten, T. De Meyer and T. Kyndt
(2021) MOLECULAR PLANT PATHOLOGY, 22,

Identification of non-canonical translation products in C. elegans using tandem mass spectrometry
B. Parmar, M. Peeters, K. Boonen, E. Clark, G. Baggerman, G. Menschaert and L. Temmerman
(2021) FRONTIERS IN GENETICS, 12, 728900

Downregulation of the FTO m(6)A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors
J. Jeschke, E. Collignon, C. Al Wardi, M. Krayem, M. Bizet, Y. Jia, S. Garaud, Z. Wimana, E. Calonne, B. Hassabi, R. Morandini, R. Deplus, P. Putmans, G. Dube, N. Singh, A. Koch, K. Shostak, L. Rizzotto, R. Ross, C. Desmedt, Y. Bareche, F. Rothe, J. Lehmann-Che, M. Duterque-Coquillaud, X. Leroy, G. Menschaert, L. Teixeira, M. Guo, P. Limbach, P. Close, A. Chariot, E. Leucci, G. Ghanem, B. Yuan, K. Willard-Gallo, C. Sotiriou, J. Marine and F. Fuks
(2021) NATURE CANCER, 2,

Single cell epigenetic visualization assay
S. Kint, W. Van Criekinge, L. Vandekerckhove, W. De Vos, K. Bomsztyk, D. Krause and O. Denisenko
(2021) NUCLEIC ACIDS RESEARCH, 49, e43

Spectral prediction features as a solution for the search space size problem in proteogenomics
S. Verbruggen, S. Gessulat, R. Gabriels, A. Matsaroki, H. Van de Voorde, B. Kuster, S. Degroeve, L. Martens, W. Van Criekinge, M. Wilhelm and G. Menschaert
(2021) MOLECULAR & CELLULAR PROTEOMICS, 20, 100076

PhaLP : a database for the study of phage lytic proteins and their evolution
B. Criel, S. Taelman, W. Van Criekinge, M. Stock and Y. Briers
(2021) VIRUSES-BASEL, 13, 1240

Ion mobility coupled to a time-of-flight mass analyzer combined with fragment intensity predictions improves identification of classical bioactive peptides and small open reading frame-encoded peptides
M. Peeters, G. Baggerman, R. Gabriels, E. Pepermans, G. Menschaert and K. Boonen
(2021) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 9, 720570

Clinically relevant aberrant Filip1l DNA methylation detected in a murine model of cutaneous squamous cell carcinoma
K. Roth, L. Coussement, E. Knatko, M. Higgins, S. Steyaert, C. Proby, T. De Meyer and A. Dinkova-Kostova
(2021) EBIOMEDICINE, 67, 103383

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
G. Rademakers, M. Massen, A. Koch, M. Draht, N. Buekers, K. Wouters, N. Vaes, T. De Meyer, B. Carvalho, G. Meijer, J. Herman, K. Smits, M. van Engeland and V. Melotte
(2021) CLINICAL EPIGENETICS, 13, 80