Publications by Wim Van Criekinge.

2025

Comprehensive analysis of the melanoma DNA methylome identifies LY75 methylation as an independent marker predicting poor clinical outcome
K. van den Hurk, K. Lommen, L. Coussement, D. van den Kerkhof, M. Beckers, G. Trooskens, L. Van Neste, M. Oosterhof, R. van Doorn, J. van den Oord, T. Kerkhofs, M. Aarts, B. Ramaekers, M. Joore, V. Winnepenninckx, W. Van Criekinge, W. Gallagher, T. De Meyer, K. Smits and M. van Engeland
(2025) JOURNAL OF INVESTIGATIVE DERMATOLOGY, 0,

Unravelling the hidden side of laundry : malodour, microbiome and pathogenome
C. Diez Lopez, F. Van Herreweghen, B. De Pessemier, Y. Minnebo, S. Taelman, K. Judge, K. Ransley, C. Hammond, M. Batson, M. Stock, W. Van Criekinge, T. Van de Wiele, A. Macmaster and C. Callewaert
(2025) BMC BIOLOGY, 23, 40

Maternal balanced energy-protein supplementation reshapes the maternal gut microbiome and enhances carbohydrate metabolism in infants : a randomized controlled trial
L. Deng, S. Taelman, M. Olm, L. Toe, E. Balini, W. Ouedraogo, Y. Bastos Moreira, A. Alemayehu, K. Hadush, E. Sonnenburg, G. Hanley-Cook, M. Ouédraogo, R. Ganaba, W. Van Criekinge, L. Huybregts, M. Stock, P. Kolsteren, J. Sonnenburg, C. Lachat and T. Dailey-Chwalibóg
(2025) NATURE COMMUNICATIONS, 16, 2683

2024

Hyperdimensional computing : a fast, robust, and interpretable paradigm for biological data
M. Stock, W. Van Criekinge, D. Boeckaerts, S. Taelman, M. Van Haeverbeke, P. Dewulf and B. De Baets
(2024) PLOS COMPUTATIONAL BIOLOGY, 20, e1012426

Loss-of-imprinting of HM13 leads to poor prognosis in clear cell renal cell carcinoma
F. Voorthuijzen, C. Stroobandt, W. Van Criekinge, T. Goovaerts and T. De Meyer
(2024) BIOMOLECULES, 14, 936

A genomic urine assay for surveillance of patients with bladder cancer treated with radiotherapy
F. de Jong, I. Iflé, A. van der Made, D. Kooper, J. de Jong, M. Franckena, T. Zuiverloon, W. Van Criekinge, L. Incrocci, E. Zwarthoff and J. Boormans
(2024) EUROPEAN UROLOGY OPEN SCIENCE, 62,

The role of Helicobacter suis, Fusobacterium gastrosuis, and the pars oesophageal microbiota in gastric ulceration in slaughter pigs receiving meal or pelleted feed
E. Taillieu, S. Taelman, S. De Bruyckere, E. Goossens, I. Chantziaras, C. Van Steenkiste, P. Yde, S. Hanssens, D. De Meyer, W. Van Criekinge, M. Stock, D. Maes, K. Chiers and F. Haesebrouck
(2024) VETERINARY RESEARCH, 55, 15

2023

Challenges in neoantigen-directed therapeutics
L. Lybaert, S. Lefever, B. Fant, E. Smits, B. De Geest, K. Breckpot, L. Dirix, S. Feldman, W. Van Criekinge, K. Thielemans, S. van der Burg, P. Ott and C. Bogaert
(2023) CANCER CELL, 41,

HIV-PULSE : a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization
L. Lambrechts, N. Bonine, R. Verstraeten, M. Pardons, Y. Noppe, S. Rutsaert, F. Van Nieuwerburgh, W. Van Criekinge, B. Cole and L. Vandekerckhove
(2023) NUCLEIC ACIDS RESEARCH, 51,

Cost-effectiveness of an urinary biomarker panel in combination with MRI for prostate cancer diagnosis
T. Govers, M. Resnick, A. Rastinehad, L. Caba, J. Groskopf and W. Van Criekinge
(2023) WORLD JOURNAL OF UROLOGY, 41,