2022

Dehydroascorbate induces plant resistance in rice against root‐knot nematode Meloidogyne graminicola
S. Chavan, J. De Kesel, W. Desmedt, E. Degroote, R. Singh, G. Nguyen Thi, K. Demeestere, T. De Meyer and T. Kyndt
(2022) MOLECULAR PLANT PATHOLOGY, 23,

Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues
A. Meijer, T. De Meyer, K. Vandepoele and T. Kyndt
(2022) BMC GENOMICS, 23, 44

Haplotyping pharmacogenes using TLA combined with Illumina or Nanopore sequencing
L. Tilleman, K. Rubben, W. Van Criekinge, D. Deforce and F. Van Nieuwerburgh
(2022) SCIENTIFIC REPORTS, 12, 17734

Standardized annotation of translated open reading frames
J. Mudge, J. Ruiz-Orera, J. Prensner, M. Brunet, F. Calvet, I. Jungreis, J. Gonzalez, M. Magrane, T. Martinez, J. Schulz, Y. Yang, M. Alba, J. Aspden, P. Baranov, A. Bazzini, E. Bruford, M. Martin, L. Calviello, A. Carvunis, J. Chen, J. Couso, E. Deutsch, P. Flicek, A. Frankish, M. Gerstein, N. Hubner, N. Ingolia, M. Kellis, G. Menschaert, R. Moritz, U. Ohler, X. Roucou, A. Saghatelian, J. Weissman and S. van Heesch
(2022) NATURE BIOTECHNOLOGY, 40,

CpG transformer for imputation of single-cell methylomes
G. De Waele, J. Clauwaert, G. Menschaert and W. Waegeman
(2022) BIOINFORMATICS, 38,

Transcript- and annotation-guided genome assembly of the European starling
K. Stuart, R. Edwards, Y. Cheng, W. Warren, D. Burt, W. Sherwin, N. Hofmeister, S. Werner, G. Ball, M. Bateson, M. Brandley, K. Buchanan, P. Cassey, D. Clayton, T. De Meyer, S. Meddle and L. Rollins
(2022) MOLECULAR ECOLOGY RESOURCES, 22,

Trans-driven variation in expression is common among detoxification genes in the extreme generalist herbivore Tetranychus urticae
A. Kurlovs, B. De Beer, M. Ji, M. Vandenhole, T. De Meyer, R. Feyereisen, R. Clark and T. Van Leeuwen
(2022) PLOS GENETICS, 18, e1010333

Technical considerations in PCR-based assay design for diagnostic DNA methylation cancer biomarkers
M. Massen, K. Lommen, K. Wouters, J. Vandersmissen, W. Van Criekinge, J. Herman, V. Melotte, L. Schouten, M. van Engeland and K. Smits
(2022) CLINICAL EPIGENETICS, 14, 56