Publications by Gerben Menschaert.

2014

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
A. Koch, D. Fijalkowska, S. Steyaert, E. Ndah, J. Crappé, S. De Keulenaer, E. De Meester, M. Ma, B. Shen, K. Gevaert, W. Van Criekinge, P. Van Damme and G. Menschaert
(2014) PROTEOMICS, 14,

2013

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing
T. De Meyer, E. Mampaey, M. Vlemmix, S. Denil, G. Trooskens, J. Renard, S. De Keulenaer, P. Dehan, G. Menschaert and W. Van Criekinge
(2013) PLOS ONE, 8, e59068

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
G. Menschaert, W. Van Criekinge, T. Notelaers, A. Koch, J. Crappé, K. Gevaert and P. Van Damme
(2013) MOLECULAR & CELLULAR PROTEOMICS, 12,

PIUS: peptide identification by unbiased search
E. Costa, G. Menschaert, W. Luyten, K. De Grave and J. Ramon
(2013) BIOINFORMATICS, 29,

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
J. Crappé, W. Van Criekinge, G. Trooskens, E. Hayakawa, W. Luyten, G. Baggerman and G. Menschaert
(2013) BMC GENOMICS, 14, 648

Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation
E. Hayakawa, G. Menschaert, P. De Bock, W. Luyten, K. Gevaert, G. Baggerman and L. Schoofs
(2013) JOURNAL OF PROTEOME RESEARCH, 12,

Colorado potato beetle (Coleoptera) gut transcriptome analysis: expression of RNA interference-related genes
L. Swevers, H. Huvenne, G. Menschaert, D. Kontogiannatos, A. Kourti, Y. Pauchet, R. Ffrench-Constant and G. Smagghe
(2013) INSECT MOLECULAR BIOLOGY, 22,

2012

Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool
G. Menschaert, E. Hayakawa, L. Schoofs, W. Van Criekinge and G. Baggerman
(2012) JOURNAL OF PROTEOME RESEARCH, 11,

2011

Diversity in protein glycosylation among insect species
G. Vandenborre, G. Smagghe, B. Ghesquière, G. Menschaert, N. Rao, K. Gevaert and E. Van Damme
(2011) PLOS ONE, 6, e16682

Linking mass spectrometric imaging and traditional peptidomics: a validation in the obese mouse model
L. Minerva, K. Boonen, G. Menschaert, B. Landuyt, G. Baggerman and L. Arckens
(2011) ANALYTICAL CHEMISTRY, 83,