Publications by Gerben Menschaert.

2015

sORFs.org : a repository of small ORFs identified by ribosome profiling
V. Olexiouk, J. Crappé, S. Verbruggen, K. Verheggen, L. Martens and G. Menschaert
(2015) NUCLEIC ACIDS RESEARCH, 44,

PROTEOFORMER : deep proteome coverage through ribosome profiling and MS integration
J. Crappé, E. Ndah, A. Koch, S. Steyaert, D. Fijalkowska, S. De Keulenaer, E. De Meester, T. De Meyer, W. Van Criekinge, P. Van Damme and G. Menschaert
(2015) NUCLEIC ACIDS RESEARCH, 43, e29

2014

N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
P. Van Damme, D. Fijalkowska, W. Van Criekinge and G. Menschaert
(2014) MOLECULAR & CELLULAR PROTEOMICS, 13,

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
A. Koch, D. Fijalkowska, S. Steyaert, E. Ndah, J. Crappé, S. De Keulenaer, E. De Meester, M. Ma, B. Shen, K. Gevaert, W. Van Criekinge, P. Van Damme and G. Menschaert
(2014) PROTEOMICS, 14,

2013

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
J. Crappé, W. Van Criekinge, G. Trooskens, E. Hayakawa, W. Luyten, G. Baggerman and G. Menschaert
(2013) BMC GENOMICS, 14, 648

Colorado potato beetle (Coleoptera) gut transcriptome analysis: expression of RNA interference-related genes
L. Swevers, H. Huvenne, G. Menschaert, D. Kontogiannatos, A. Kourti, Y. Pauchet, R. Ffrench-Constant and G. Smagghe
(2013) INSECT MOLECULAR BIOLOGY, 22,

PIUS: peptide identification by unbiased search
E. Costa, G. Menschaert, W. Luyten, K. De Grave and J. Ramon
(2013) BIOINFORMATICS, 29,

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
G. Menschaert, W. Van Criekinge, T. Notelaers, A. Koch, J. Crappé, K. Gevaert and P. Van Damme
(2013) MOLECULAR & CELLULAR PROTEOMICS, 12,

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing
T. De Meyer, E. Mampaey, M. Vlemmix, S. Denil, G. Trooskens, J. Renard, S. De Keulenaer, P. Dehan, G. Menschaert and W. Van Criekinge
(2013) PLOS ONE, 8, e59068

Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation
E. Hayakawa, G. Menschaert, P. De Bock, W. Luyten, K. Gevaert, G. Baggerman and L. Schoofs
(2013) JOURNAL OF PROTEOME RESEARCH, 12,