Publications by Gerben Menschaert.

2019

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert and P. Van Damme
(2019) MOLECULAR & CELLULAR PROTEOMICS, 18,

Proteomics Standards Initiative extended FASTA format
P. Binz, J. Shofstahl, J. Vizcaíno, H. Barsnes, R. Chalkley, G. Menschaert, E. Alpi, K. Clauser, J. Eng, L. Lane, S. Seymour, L. Hernández Sánchez, G. Mayer, M. Eisenacher, Y. Perez-Riverol, E. Kapp, L. Mendoza, P. Baker, A. Collins, T. Van Den Bossche and E. Deutsch
(2019) JOURNAL OF PROTEOME RESEARCH, 18,

2018

The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data
G. Menschaert, X. Wang, A. Jones, F. Ghali, D. Fenyö, V. Olexiouk, B. Zhang, E. Deutsch, T. Ternent and J. Vizcaíno
(2018) GENOME BIOLOGY, 19, 12

mQC : a post-mapping data exploration tool for ribosome profiling
S. Verbruggen and G. Menschaert
(2018) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 181, 104806

Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans
S. Van Bael, J. Watteyne, K. Boonen, W. De Haes, G. Menschaert, N. Ringstad, H. Horvitz, L. Schoofs, S. Husson and L. Temmerman
(2018) JOURNAL OF BIOLOGICAL CHEMISTRY, 293,

Deletion 6q drives T-cell leukemia progression by ribosome modulation
S. Gachet, T. El-Chaar, D. Avran, E. Genesca, F. Catez, S. Quentin, M. Delord, G. Thérizols, D. Briot, G. Meunier, L. Hernandez, M. Pla, W. Smits, J. Buijs-Gladdines, W. Van Loocke, G. Menschaert, I. André-Schmutz, T. Taghon, P. Van Vlierberghe, J. Meijerink, A. Baruchel, H. Dombret, E. Clappier, J. Diaz, C. Gazin, H. de Thé, F. Sigaux and J. Soulier
(2018) CANCER DISCOVERY, 8,

Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides
H. Budamgunta, V. Olexiouk, W. Luyten, K. Schildermans, E. Maes, K. Boonen, G. Menschaert and G. Baggerman
(2018) PROTEOMICS, 18, 1700218

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini
C. Na, M. Barbhuiya, M. Kim, S. Verbruggen, S. Eacker, O. Pletnikova, J. Troncoso, M. Halushka, G. Menschaert, C. Overall and A. Pandey
(2018) GENOME RESEARCH, 28,

A gene family coding for salivary proteins (SHOT) of the polyphagous spider mite Tetranychus urticae exhibits fast host-dependent transcriptional plasticity
W. Jonckheere, W. Dermauw, M. Khaglighi, N. Pavlidi, W. Reubens, G. Baggerman, L. Tirry, G. Menschaert, M. Kant, B. Vanholme and T. Van Leeuwen
(2018) MOLECULAR PLANT-MICROBE INTERACTIONS, 31,

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling
V. Olexiouk, W. Van Criekinge and G. Menschaert
(2018) NUCLEIC ACIDS RESEARCH, 46,