Gerben Menschaert Publications

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms

S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert, P. Van Damme

MOLECULAR & CELLULAR PROTEOMICS · 18

Proteomics Standards Initiative extended FASTA format

P. Binz, J. Shofstahl, J. Vizcaíno, H. Barsnes, R. Chalkley, G. Menschaert, E. Alpi, K. Clauser, J. Eng, L. Lane, S. Seymour, L. Hernández Sánchez, G. Mayer, M. Eisenacher, Y. Perez-Riverol, E. Kapp, L. Mendoza, P. Baker, A. Collins, T. Van Den Bossche, E. Deutsch

JOURNAL OF PROTEOME RESEARCH · 18 · 2686–2692

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis

E. Hayakawa, H. Watanabe, G. Menschaert, T. Holstein, G. Baggerman, L. Schoofs

PLOS ONE · 14 · e0215185

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics

H. Budamgunta, E. Maes, H. Willems, G. Menschaert, K. Schildermans, A. Kumar, K. Boonen, G. Baggerman

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES · 1124 · 256–264

Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine

K. Boonen, K. Hens, G. Menschaert, G. Baggerman, D. Valkenborg, G. Ertaylan

GENES · 10 · 682

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

J. Clauwaert, G. Menschaert, W. Waegeman

NUCLEIC ACIDS RESEARCH · 47 · e36