Publications by Gerben Menschaert.

2021

Identification of non-canonical translation products in C. elegans using tandem mass spectrometry
B. Parmar, M. Peeters, K. Boonen, E. Clark, G. Baggerman, G. Menschaert and L. Temmerman
(2021) FRONTIERS IN GENETICS, 12, 728900

Downregulation of the FTO m(6)A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors
J. Jeschke, E. Collignon, C. Al Wardi, M. Krayem, M. Bizet, Y. Jia, S. Garaud, Z. Wimana, E. Calonne, B. Hassabi, R. Morandini, R. Deplus, P. Putmans, G. Dube, N. Singh, A. Koch, K. Shostak, L. Rizzotto, R. Ross, C. Desmedt, Y. Bareche, F. Rothe, J. Lehmann-Che, M. Duterque-Coquillaud, X. Leroy, G. Menschaert, L. Teixeira, M. Guo, P. Limbach, P. Close, A. Chariot, E. Leucci, G. Ghanem, B. Yuan, K. Willard-Gallo, C. Sotiriou, J. Marine and F. Fuks
(2021) NATURE CANCER, 2,

2020

Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation
J. Lan, N. Rajan, M. Bizet, A. Penning, N. Singh, D. Guallar, E. Calonne, A. Li Greci, E. Bonvin, R. Deplus, P. Hsu, S. Nachtergaele, C. Ma, R. Song, A. Fuentes-Iglesias, B. Hassabi, P. Putmans, F. Mies, G. Menschaert, J. Wong, J. Wang, M. Fidalgo, B. Yuan and F. Fuks
(2020) NATURE COMMUNICATIONS, 11, 4956

Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly
S. Zhang, B. Reljić, C. Liang, B. Kerouanton, J. Francisco, J. Peh, C. Mary, N. Jagannathan, V. Olexiouk, C. Tang, G. Fidelito, S. Nama, R. Cheng, C. Wee, L. Wang, P. Duek Roggli, P. Sampath, L. Lane, E. Petretto, R. Sobota, S. Jesuthasan, L. Tucker-Kellogg, B. Reversade, G. Menschaert, L. Sun, D. Stroud and L. Ho
(2020) NATURE COMMUNICATIONS, 11, 1312

The hunt for sORFs : a multidisciplinary strategy
M. Peeters and G. Menschaert
(2020) EXPERIMENTAL CELL RESEARCH, 391, 111923

A methodology for discovering novel brain-relevant peptides : combination of ribosome profiling and peptidomics
R. Tharakan, S. Kreimer, C. Ubaida-Mohien, J. Lavoie, V. Olexiouk, G. Menschaert, N. Ingolia, R. Cole, K. Ishizuka, A. Sawa and L. Nucifora
(2020) NEUROSCIENCE RESEARCH, 151,

2019

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns
J. Clauwaert, G. Menschaert and W. Waegeman
(2019) NUCLEIC ACIDS RESEARCH, 47, e36

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
S. Verbruggen, E. Ndah, W. Van Criekinge, S. Gessulat, B. Kuster, M. Wilhelm, G. Menschaert and P. Van Damme
(2019) MOLECULAR & CELLULAR PROTEOMICS, 18,

Proteomics Standards Initiative extended FASTA format
P. Binz, J. Shofstahl, J. Vizcaíno, H. Barsnes, R. Chalkley, G. Menschaert, E. Alpi, K. Clauser, J. Eng, L. Lane, S. Seymour, L. Hernández Sánchez, G. Mayer, M. Eisenacher, Y. Perez-Riverol, E. Kapp, L. Mendoza, P. Baker, A. Collins, T. Van Den Bossche and E. Deutsch
(2019) JOURNAL OF PROTEOME RESEARCH, 18,

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis
E. Hayakawa, H. Watanabe, G. Menschaert, T. Holstein, G. Baggerman and L. Schoofs
(2019) PLOS ONE, 14, e0215185